adpreclone.pl error while running copyBinary.sh on a 12.2 Environment

In a 12.2.5 environment adpreclone.pl errors out while running copyBinary.sh adpreclone.pl on appsTier



$perl adpreclone.pl appsTier

                     Copyright (c) 2011, 2014 Oracle Corporation
                        Redwood Shores, California, USA

                        Oracle E-Business Suite Rapid Clone

                                 Version 12.2

                      adpreclone Version 120.31.12020000.20

Enter the APPS User Password:
Enter the Weblogic AdminServer password :

 Checking the status of the Oracle WebLogic Administration Server....

 Running perl /test12/applmgr/fs1/EBSapps/appl/ad/12.0.0/patch/115/bin/adProvisionEBS.pl ebs-get-serverstatus -contextfile=/test12/applmgr/fs1/inst/apps/test12_vmohswrly128/appl/admin/test12_vmohswrly128.xml -servername=AdminServer -promptmsg=hide

The Oracle WebLogic Administration Server is up.

Running:
perl /test12/applmgr/fs1/EBSapps/appl/ad/12.0.0/bin/adclone.pl java=/test12/applmgr/fs1/EBSapps/comn/util/jdk64 mode=stage stage=/test12/applmgr/fs1/EBSapps/comn/clone component=appsTier method= appctx=/test12/applmgr/fs1/inst/apps/test12_vmohswrly128/appl/admin/test12_vmohswrly128.xml showProgress



 Setting the wls environment

Beginning application tier Stage - Thu Aug 18 02:43:26 2016

/test12/applmgr/fs1/EBSapps/comn/util/jdk64/bin/java -Xmx600M -DCONTEXT_VALIDATED=false -Doracle.installer.oui_loc=/oui -classpath /test12/applmgr/fs1/FMW_Home/webtier/lib/xmlparserv2.jar:/test12/applmgr/fs1/FMW_Home/webtier/jdbc/lib/ojdbc6.jar:/test12/applmgr/fs1/EBSapps/comn/java/classes:/test12/applmgr/fs1/FMW_Home/webtier/oui/jlib/OraInstaller.jar:/test12/applmgr/fs1/FMW_Home/webtier/oui/jlib/ewt3.jar:/test12/applmgr/fs1/FMW_Home/webtier/oui/jlib/share.jar:/test12/applmgr/fs1/FMW_Home/webtier/../Oracle_EBS-app1/oui/jlib/srvm.jar:/test12/applmgr/fs1/FMW_Home/webtier/jlib/ojmisc.jar:/test12/applmgr/fs1/FMW_Home/wlserver_10.3/server/lib/weblogic.jar:/test12/applmgr/fs1/FMW_Home/oracle_common/jlib/obfuscatepassword.jar  oracle.apps.ad.clone.StageAppsTier -e /test12/applmgr/fs1/inst/apps/test12_vmohswrly128/appl/admin/test12_vmohswrly128.xml -stage /test12/applmgr/fs1/EBSapps/comn/clone -tmp /tmp -method CUSTOM   -showProgress -nopromptmsg

Log file located at /test12/applmgr/fs1/inst/apps/test12_vmohswrly128/admin/log/clone/StageAppsTier_08180243.log

  \     20% completed
ERROR while running Stage...
Thu Aug 18 02:50:43 2016

ERROR while running perl /test12/applmgr/fs1/EBSapps/appl/ad/12.0.0/bin/adclone.pl java=/test12/applmgr/fs1/EBSapps/comn/util/jdk64 mode=stage stage=/test12/applmgr/fs1/EBSapps/comn/clone component=appsTier method= appctx=/test12/applmgr/fs1/inst/apps/test12_vmohswrly128/appl/admin/test12_vmohswrly128.xml showProgress ...
Thu Aug 18 02:50:43 2016
[aptest12@vmohswrly128 <RUN> ]


adpreclone log files shows the below error message

Error Message:

START: Creating FMW archive.
Running /test12/applmgr/fs1/FMW_Home/oracle_common/bin/copyBinary.sh -javaHome /test12/applmgr/fs1/EBSapps/comn/clone/FMW/t2pjdk -al /test12/applmgr/fs1/EBSapps/comn/clone/FMW/FMW_Home.jar -smw /test12/applmgr/fs1/FMW_Home -ldl /test12/applmgr/fs1/inst/apps/test12_vmohswrly128/admin/log/clone/fmwT2PStage -invPtrLoc /etc/oraInst.loc -silent true -debug true
Script Executed in 298222 milliseconds, returning status 1
ERROR: Script failed, exit code 1

Solution:

1. set the environment variable T2P_JAVA_OPTIONS as given below

$export T2P_JAVA_OPTIONS="-Djava.io.tmpdir=/test12/applmgr/temp"

2. Make sure enough free space is available in the temp directory provided above

3.Rerun adpreclone.pl on appsTier

ADOP Prepare Phase Fails with ORA-31011: XML parsing failed

While applying Patch on a test instance (R12.2.5), Prepare phase failed with error ORA-31011: XML parsing failed

Complete error message from adop logfile
==================================

[aptest12@localhost <RUN> ]$ adop phase=prepare

Enter the APPS password:
Enter the SYSTEM password:
Enter the WLSADMIN password:

Validating credentials.

Initializing.
    Run Edition context  : /test12/applmgr/fs2/inst/apps/test12_localhost/appl/admin/TEST12_localhost.xml
    Patch edition context: /test12/applmgr/fs1/inst/apps/test12_localhost/appl/admin/TEST12_localhost.xml
    Patch file system free space: 1130.34 GB

Validating system setup.
    [ERROR]     Failed to execute SQL statement:
select node_name from FND_OAM_CONTEXT_FILES
where NAME not in ('TEMPLATE','METADATA','config.txt') and
CTX_TYPE='A' and (status is null or upper(status) in ('S','F'))
and EXTRACTVALUE(XMLType(TEXT),'//file_edition_type') = 'run'
and EXTRACTVALUE(XMLType(TEXT),'//oa_service_group_status[@oa_var=''s_web_admin_status'']')='enabled'
and EXTRACTVALUE(XMLType(TEXT),'//oa_service_list/oa_service[@type=''admin_server'']/oa_service_status')='enabled'

    [ERROR]     Error Message:
    [ERROR]     ORA-31011: XML parsing failed
    [ERROR]     ORA-19202: Error occurred in XML processing
    [ERROR]     LPX-00229: input source is empty
    [ERROR]     ORA-06512: at "SYS.XMLTYPE", line 272
    [ERROR]     ORA-06512: at line 1 (DBD ERROR: error possibly near <*> indicator at char 208 in '    select node_name from FND_OAM_CONTEXT_FILES
    [ERROR]         where NAME not in ('TEMPLATE','METADATA','config.txt') and
    [ERROR]             CTX_TYPE='A' and (status is null or upper(status) in ('S','F'))
    [ERROR]             and EXTRACTVALUE(<*>XMLType(TEXT),'//file_edition_type') = 'run'
    [ERROR]             and EXTRACTVALUE(XMLType(TEXT),'//oa_service_group_status[@oa_var=''s_web_admin_status'']')='enabled'
    [ERROR]             and EXTRACTVALUE(XMLType(TEXT),'//oa_service_list/oa_service[@type=''admin_server'']/oa_service_status')='enabled'
    [ERROR]     ')
    [UNEXPECTED]Error occurred identifying Admin server node


[STATEMENT] Please run adopscanlog utility, using the command

"adopscanlog -latest=yes"

to get the list of the log files along with snippet of the error message corresponding to each log file.


Cause:

fnd_oam_context_files table has incorrect information  or the table is corrupted


Solution:


1. Login to sqlplus as applsys and take backup of fnd_oam_context_files table.


SQL> conn applsys
Enter password:
Connected.
SQL> create table fnd_oam_context_files_bkp as select * from fnd_oam_context_files;

Table created.

2. Truncate Table fnd_oam_context_files

SQL>  truncate table fnd_oam_context_files;

Table truncated.


3. Bring down MT Services

4. Run Autoconfig to populate fnd_oam_context_files  with right information.